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Welcome to the website of Prof. Kim-Anh Lê Cao’s lab group at Melbourne Integrative Genomics and the School of Mathematics and Statistics, University of Melbourne!
Our lab focuses on the development of computational methods, their applications in areas informed by biology, and the training of the new generation of computational biologists and data analysts. Our area of expertise is in the integration of biological ‘omics data (transcriptomics, proteomics, metabolomics etc., as well as microbiome, metagenomics, single cell transcriptomics and multi-omics) with multivariate and dimension reduction methodologies, selection of features of biomarkers in large biological data sets and R software development. Our group provides critical collaborative expertise to biologists, bioinformaticians, statisticians and clinicians and welcomes budding data analysts.
Our aim is to broadly enable scientific progress well beyond statistical development itself. We value creative thinking in statistical methodological development to address critical challenges arising from high throughput biological research.
More news about 
(workshops and updates): www.mixOmics.org
Lab head: Prof Kim-Anh Lê Cao
Director of Melbourne Integrative Genomics (MIG)
Director of research (Maths & Stats)
Melbourne Integrative Genomics & School of Mathematics and Statistics
Building 184 ground floor | University of Melbourne | Parkville VIC 3010
@: kimanh.lecao[ at ]unimelb.edu.au | twitter: @mixOmics_team | Ph: +61 3 8344 3971
News
Click on this link to read all our News
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NeighbourNet: Scalable cell-specific co-expression networks for granular regulatory pattern discovery
We introduce the latest work from our PhD student Yidi Deng (who has already secured a postdoc position at ANU!). Understanding how genes interact at the single-cell level is key to unlocking the complexity of biological systems. Traditional GRN inference often overlooks the nuances within individual cells by relying on predefined clusters or assuming static regulation. NNet has been designed to construct …
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Φ-Space ST: a platform-agnostic method to identify cell states in spatial transcriptomics studies + seminar recording
Dr Jiadong Mao has worked on an extension of his previous method Φ-Space for spatial transcriptomics studies! We are very excited about these new developments and the potential of Φ-Space for single cell annotation! Φ-Space ST is: A novel and fast approach for cell type composition analysis. Platform-Agnostic and Scalable as it works across multiple spatial transcriptomics (ST) platforms, including CosMx, …
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mixOmics online workshop starts 24th Feb, registrations are open
Registrations for our next online course are now open! Registration and details: https://mixomics.org/2024/12/online-course-feb-24-april-11-2025/ This course is designed for: Beginners looking for an introduction to mixOmics methods for single- and multi-omics analyses. Current mixOmics users who want to deepen their understanding of the methods. Participants who would like more guidance on analyzing their own data (we also provide exemplar datasets and a …
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Semisynthetic Simulation for Microbiome Data Analysis
Dr Kris Sankaran (University of Wisconsin) was one of our Belz recipient from the School of Maths & Stats and came for 6-week visit to our lab. We worked on expanding scDesign3 to the simulation of realistic microbiome data in several analytical scenarios and tested our tutorials and resources in 3 face-to-face workshops hosted by the School. Our framework starts …
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Gene Content of Seawater Microbes is a Strong Predictor of Water Chemistry Across the Great Barrier Reef
PhD candidate Marko Terzin from James Cook University and the Australian Institute of Marine Science (AIMS) has spent a few months in 2023 in our lab to complement his learning about mixOmics techniques to analyse his data. He is back this year to finish off his PhD. In this study, Marko analysed seawater metagenomics samples to better understand the Great Barrier …
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Global picoplankton biogeography revealed by metagenomic and climatic data integration
Vini Salazar is reaching the end of his PhD candidature (and has already secured a continuing position at Melbourne Bioinformatics, UoM 🎉). His preprint is one of this major contributions of his PhD thesis (he also published Metaphor, to assemble metagenomes)! We compiled and bioinformatically processed 1454 metagenomes from multiple sampling consortia, resulting in the largest integrated surface ocean metagenome …
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PLSKO: a robust knockoff generator to control false discovery rate in omics variable selection
Our PhD student Guannan Yang has submitted her first manuscript! PLSKO is a new and robust knockoff variable generator that is applicable to various types of omics data. Knockoff generators enable to create 'knockoff copies' of original data to control for False Discovery Rate without the need to calculate p-values. PLSKO is: assumption-free controls FDR with sufficient statistical power in omics studies …
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Φ-Space: Continuous phenotyping of single-cell multi-omics data with video!
Jiadong Mao has developed a new PLS method for cell type continuous annotation of single cells, now in preprint! Φ-Space addresses numerous challenges faced by state-of-the-art automated annotation methods: to identify continuous and out-of-reference cell states, to deal with batch effects in reference, to utilise bulk references and multi-omic references. Φ-Space uses soft classification to phenotype cells on a continuum. …
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Microbial network inference for longitudinal microbiome studies with LUPINE with video!
Dr Saritha Kodikara has developed a PLS-based to infer microbial networks across time! LUPINE is a PLS-based method that combines dimension reduction, and partial correlations to infer associations between taxa. LUPINE takes into account information across time points LUPINE has been designed for relatively small sample sizes and small number of time points Microbial network inference for longitudinal microbiome studies with …
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Translating big data into better health thanks to major grant
[from the faculty of science newsroom, written by Rebecca Colless] Biological markers predicting pre-eclampsia – a pregnancy disorder that causes premature births and serious health problems for mothers and babies – and a better understanding of antibiotic resistance are among the potential outcomes of new research being led by a Faculty of Science statistician. Professor Kim-Anh Lê Cao from the School of …
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Dean’s Honours Award for PhD thesis to Dr Yiwen Wang
Our former student, Dr Yiwen (Eva) Wang was awarded the Dean’s Honours Award on November 22nd, an award that recognises excellence in a PhD thesis submitted in the previous year. Dr Wang conducted her research at Melbourne Integrative Genomics and the School of Mathematics and Statistics, under the supervision of Prof Kim-Anh Lê Cao. The Dean of Science, Moira O’Bryan and …
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StableMate to select stable predictors in omics data
Variable selection in 'omics data is essential to identify reliable markers of diseases, or shed light into molecular mechanisms. however, many variable selection methods in multivariate analysis (e.g. lasso or elastic net penalised regression, machine learning approaches) lack of robustness against small variation in the data. PhD student Yidi Deng was inspired by the stabilised regression framework from Pfister et al. (2021) that enables …
Click on this link to read all our News
Our lab specialises computational methods and software developments, as well as the application of our methods and tools to biological data sets generated by our collaborators.
Data integration methods using multivariate projection-based methodologies
Our dimension reduction methods are based on the Projection to Latent Structures algorithm (PLS, a term we prefer to Partial Least Squares regression, Wold et al. 2001) that are combined with LASSO regularization to identify important biological features or biomarkers in large-scale biological data sets. Our latest frameworks include DIABLO (Singh et al. 2019) to integration multiple data sets measured on the same N samples (N-integration); MINT (Rohart et al. 2017a) to integrate independent studies measured on the same P variables / genes (P-integration) and mixMC (Lê Cao et al. 2016) for the multivariate analysis of microbial communities, timeOmics (Bodein et al. 2020) to integrate microbiome and ‘omics time course data.
We are interested in developing new multivariate methodologies to
- integrate multi-omics single cell data on matching cells (multiome ATAC-seq, CITE-seq, scNMT-seq)
- integration of multi-omics time course data
- integrate multi-omics and microbiome data
mixOmics R toolkit package (www.mixOmics.org)
mixOmics is one of the few R package dedicated to the integration of multiple ‘omics data (19 novel methodologies implemented so far, amongst which 13 were developed by our lab) and with an increasing uptake from the research community. The package is in the top 5% downloads in Bioconductor ( ~ 80K downloads / year). Check our our recent publication (Rohart et al. 2017b) and and 50-min webinar overview about this project. The mixOmics team run multiple day workshops for an introduction to multivariate projection-based methods for data integration using mixOmics, see our website www.mixOmics.org for news, tutorials, online courses. We continuously improve our software to support our growing userbase.
Multivariate methods for microbiome studies
There are major statistical and computational challenges in analysing microbial communities that currently hinder the potential of microbiome research to substantially advance biomedical understanding. We are currently expanding mixMC to better characterise and understand important microbiome-host interactions. Some of our methods developments aim at addressing batch effects in microbiome experiments and analyse scarce temporal sampling in time course studies.
We analyse microbiome datasets from our collaborators for a wide range of studies, including investigating the role of gut and oral microbiome in spondyloarthropathy diseases, the development of intestinal or salivary microbiota in toddlers and infants, investigating the gut-brain crosstalk in Huntington’s disease, anaerobic digestion in fermenters.
Lab retreat 2025 in Healesville, featuring (left to right, back to front):
David, Chengyi, Jiadong, Marko, Dan, Xiaochen;
Bin, Eva, Saritha, Eva H, Kim-Anh, Guan, Yifan
Current members
Staff members
- [new R mixOmics developer, application close 21st July 2025]
- David Hirst, postdoctoral fellow [omics, data integration]
- Yiwen (Eva) Wang, postdoctoral fellow [microbiome and batch effects, developer of PLS-DA batch during her PhD]
- Jiadong Mao, postdoctoral fellow [single cell annotation for omics and spatial using projection methods, developer of Phi-space]
- Saritha Kodikara, postdoctoral fellow [longitudinal microbiome data, developer of Lupine]
Higher Degree Research PhD students (italic = co-supervision)
- Zuzana Leova, PhD candidate, co-supervision with David Hirst [quantum computing, omics],
- Chengyi Ma, PhD candidate, co-supervision with Jiadong Mao [deep learning, omics and integration with imaging data]
- Yeganeh Kazaei, PhD candidate, with Mihiri Silva (main supervisor) & Stuart Dashper from Melbourne Dental School, and Saritha Kodikara [dental caries, predictive models]
- Xiaochen Zhang, PhD candidate, co-supervision with Jiadong Mao [deep generative models applied to single cell RNA-seq, quantum computing applied to omics]
- Guannan Yang, PhD candidate, with Prof Eva Dimitriadis and Dr Elle Menkhorst, Department of Obstetrics and Gynaecology [knock-off methods for bulk omics data, developer of PLS-KO]
- Daniel Rawlinson, PhD candidate, with Prof Lachlan Coin (main supervisor), Doherty Institute [variable selection, bulk and single cell multi-omics data, developer of Forward Selection-PLS]
Higher Degree Research Msc students by coursework
- Samantha Young, Msc Statistics, co-supervision with Yiwen Wang [microbiome]
- Chris Dalas Christodoulides, co-supervision with Saritha Kodikara [ecological measures, multi-block]
- Bin Xie, main supervision by Eva Yiwen Wang
Visitors (see our list of past visitors here)
- Emile Mardoc, research fellow, Metagenopolis INRAE, 6 weeks, 2025.
We welcome students and academics who are interested in statistical analysis of omics data and wish to attend our fortnight group meetings!
Alumni staff
- Eva Hamrud, R mixOmics developer
- Max Bladen, now research assistant in genomics
- Daniel Tien Phung, now PhD student
- Al J Abadi, now Senior Data Scientist
- Katherine Lange, Murdoch Research Institute
- Dr Aleksandar Dakic
- Dr Zitong Li, now Senior scientist at CSIRO
- Dr Malathi Imiyage Dona, postdoctoral fellow at Baker institute
- Dr Florian Rohart , now Senior Strategic Insights Lead
- Nicholas Matigian – now biostatistician at QFAB Bioinformatics
- Benoit Gautier – now teacher in mathematics in France.
Alumni students (PhD)
- Vinícius Salazar, PhD candidate, with A/Prof Heroen Verbruggen & Dr Vanessa Rossetto Marcelino (MIG) [metagenomics analysis and integration with environmental variables, developer of Metaphor], now bioinformatician (continuing position), at Melbourne Bioinformatics.
- Yidi Deng, PhD candidate, co-supervision with Dr Jarny Choi (St Vincent Institute) and Jiadong Mao [variable selection in bulk and single cell RNA-seq data, developer of Sincast and StableMate], now postdoctoral fellow at ANU
- Eva Yiwen Wang, ‘Statistical and Computational Methods for Microbiome Data Analysis‘, UoM, assistant professor at Agricultural Genomics Institute at Shenzhen, now McKenzie fellow at UoM.
- Aimee Hanson, ‘Lymphocyte receptors: Genomic structure and role in immune- mediated arthritis’ with main supervisor Prof Matt Brown (QUT) and Diamantina Institute, Faculty of Medicine, University of Queensland, now research fellow at King’s college London.
- Farah Syeda Zahir, ‘Obesity paradox: Exploring the relationship between adiposity and mortality in persons with Cardiovascular Disease and/or Type 2 Diabetes Mellitus’, co-supervised with Dr Ahmed Medi (Diamantina Institute), School of public Health, University of Queensland, now biostatistician at QFAB
- Jasmin Straube ‘Development of statistical tools for integrating time course ‘omics’ data’ with co-supervisors Dr Emma Huang and Dr Anne Bernard, QFAB and University of Queensland, now research fellow at QIMR
- Ralph Patrick ‘Molecular interaction motifs in a system-wide network context: Computationally charting transient kinase-substrate phosphorylation events’ with main supervisor A/Prof Mikael Boden, University of Queensland, now research fellow at Victor Chang institute
- Amrit Singh ‘Blood biomarker panels of the late phase asthmatic response’ with main supervisor Prof Scott Tebbutt, University of British Columbia, Vancouver, Canada, now Assistant Professors at University of British Columbia
- Chao Liu ‘Computational analysis of DNA repair pathways in breast cancer’ with main supervisor Prof Mark Ragan, Institute for Molecular Bioscience, University of Queensland
Alumni students (Honours and Msc)
- Pei-Hsiu (Edward) Kao, Msc Bioinformatics, co-supervision with Saritha Kodikara [microbiome atlas, T2D]
- Hongyu Zhao, Msc Statistics, co-supervision with Jiadong Mao [single cell, spatial]
- Yifan Qin, Msc Biotechnology, co-supervision with Jiadong Mao [spatial multi-omics, data analysis]
- Isaac Virshup, MPhil ‘Finding patterns of biologically meaningful transcript expression by examining heterogenous sets of cells’, UoM with main supervisor Prof Christine Wells
- Qinwen Chen, Msc Statistics by coursework, UoM
- Guannan Yang, Honours, co-supervision with Prof Eva Dimitriadis and Dr Ellen Menkhorst (Department of Obstetrics & Gynaecology)
- Sibi Xue, Msc Statistics by coursework, UoM
- Yinghua Shen, Msc Statistics by coursework, UoM
- Mengqi (Chi-Chi) Hu, Msc Bioinformatics by coursework, UoM
- Alana Butler, Master of Science (Bioinformatics), UoM, now research assistant at Monash University.
- Nicholas d’Arcy, Nicholas Mueller, University of Queensland
- Solange Pruilh, Zoe Welham, Vanessa Lakis, Priscilla Montfalet, Thom Cuddihy, Mourad Larbi, Jeff Coquery, Pierre Monget who did a research placement in our lab.
Conventional publications
Publications are listed here. We are fervent advocates of open science and open data, with some manuscripts hosted in bioRxiv, and all R codes and scripts on our mixOmics page and www.github/mixOmicsTeam .
Book
Lê Cao K-A. and Welham Z (2021). Multivariate Data Integration Using R: Methods and Applications with the mixOmics package. CRC Chapman & Hall. 306 pages, 14 chapters.
Other publications (refereed by editorial board)
- Huang BE, Clifford D and Lê Cao K-A (2014). The surprising benefit of passive-aggressive behaviour at Christmas parties: being crowned king of the crackers. Medical Journal of Australia 201(11):694-6 (Christmas issue, awarded first prize, radio interview from ABC Darwin, mentioned in the podcast from Two Shrink Pod (episode 21, Dec 2017).
- Clifford D, Lê Cao K-A and Huang BE (2014). The statistician’s guide to a cracking good Christmas party. Significance 11(5):44-7 (Christmas issue, doi: 10.1111/j.1740- 9713.2014.00784.x).
- Lê Cao K-A (2019). Heroines of mathematics. The Pursuit, an engagement journal published at UoM (8.4K views, August 2019, co-written, leading to an interview at ABC radio with Myf Warhust)
- Lê Cao K-A (2020). Get to know your microbiome better. The Pursuit (2.5K views, Jan 2020).
- Lê Cao, K-A., Abadi, A.J., Davis-Marcisak, E.F. et al.(2021) Community-wide hackathons to identify central themes in single-cell multi-omics. Genome Biol 22,
Awards and fellowships
2020 – 2022 Superstars of STEM (Science Technology Australia) to gain advanced communication skills and increase the public visibility of women in STEM.
2019 Homeward Bound year-long leadership program for women with a background in STEMM, culminating to a voyage in Antarctica.
2019 The University of Melbourne Dean’s Award for Excellence in Research (mid-career)
2019 Georgina Sweet Award created by Prof L Tilley (ARC Laureate) to promote female scientists with excellence in Quantitative Biomedical Science (up to 3 awards / year)
2019 – 2022 Career Development Fellowship (CDF2) from the National Health and Medical Council Research (NHMRC) ‘Microbiome biomarkers of human disease: novel computational methods to facilitate therapeutic developments’, $483K.
2019 Moran medal from the Australian Academy of Science for contribution in the past 10 years in Statistical sciences in Australia (early-career, biennial)
2015 – 2019 Career Development Fellowship (CDF1) from the National Health and Medical Council Research (NHMRC) ‘Development of statistical methodologies and application to clinical cancer studies’, $419K.
2009 Laurent-Duhamel triennial prize from the French Statistical Society for PhD thesis in Applied Statistics, Bordeaux, France.
Current funding (UoM)
2021 – 2026 MRFF Preventive and Public Health Research Initiative. Infant2Child: Targeting common risk factors to optimise nutrition and reduce childhood dental caries in the first 2000 days. Dr M Silva, A/Prof Rachel Laws, Dr Margarita Moreno-Betancur, Prof Stuart Dashper, Dr Miaobing Zheng, A/Prof Martin Hall, Prof David Burgner, Dr Ankur Singh, Associate Professor Nicky Kilpatrick, A/Prof K-A Lê Cao, Dr L Petrick. Total AUD$1,267,826.21 (150k in 2024-2026)
2021 – 2023 Juvenile Diabetes Research Foundation Australia, ENDIA Early-Mid Career Science Accelerator Awards Influence of early life and maternal host-microbiota interactions on type 1 diabetes risk. A/Prof E Hamilton Williams, Prof M Knip, A/Prof M Hill, A/Prof K-A Lê Cao , Prof Harrison. AUD$ 442,502
2021 – 2026 National Institute of Dental and Craniofacial Research/National Institutes of Health R01DE029838-01 Reconstructing early life environmental exposures using tooth biomarkers and their influence on the trajectory of the oral microbiome and oral health in childhood. Dr C Austin, Dr C Adler, Prof M Arora, Dr M Bockman, Dr P Curtin, A/Prof Hughes, A/Prof K-A Lê Cao, Dr L Petrick. Role: PI. Total USD$ 3,655,958. (~ USD$166.426 from Y3-5). Icahn School of Medicine at Mount Sinai, University of Adelaide, Sydney and Melbourne.
2020 – 2023 ARC Discovery Project DP200102903. Empirical and computational solutions for multi-omics single-cell assays. A/Prof K-A Lê Cao, Dr Heather Lee (UoN), A/Prof Matt Ritchie (WEHI) and A/Prof. Stephanie Bougeard (ANSES). Role: CIA. $650K
Patents
The application of our methods and software has directly resulted in four biomedical patents.
- Gandhi M, Keane C, Lê Cao K-A, Vari F (2015). A method of assessing prognosis of lymphoma. WO/2016/134416. Priority 23/02/2016
- Thomas R, Mehdi A, Lê Cao K-A (2014). Kits and methods for the diagnosis, treatment, prevention and monitoring of diabetes. PCT/AU2014/050415. Priority 18/06/2015
- Hill M, Shah A, Lê Cao K-A (2014). Blood Test for Throat Cancer. WO/2016/077881. Priority 17/11/2015
- Musso O, Desert R, Rohart F, Lê Cao K-A. Method for predicting the survival time of a patient suffering from hepatocellular Carcinoma. EP17305436.2. Priority 12/04/2017
Past funding (UoM and University of Queensland)
2018 – 2021 NHMRC Project Grant, GNT1142456. Enhancing host defence mechanisms in severe bacterial infections. Dr A Blumenthal, Prof B Venkatesh, Prof D Evans, Dr K-A Lê Cao, Prof G Ulett, A/Prof J Cohen. Role: CID. $837K
2018 – 2021 NHMRC Project Grant. GNT1144941. Understanding how azithromycin prevents exacerbations in severe asthma. Prof J Upham, Prof J Simpson, Dr K Baines, Dr K- A Lê Cao. Role: CID. $698K
2018 – 2019 Silicon Valley Community Foundation, HCA2-A-1708-02277, Multivariate computational methods for data integration of single cell assays. Role: CIA. $132K
2018 – 2019 ARC Special Research Initiative in Stem cells Centre of Excellence, Stem Cells Australia led by Prof M Little (UoM). Role: co-CI. $3M, 1 research fellow in Lê Cao group.
2018 UoM Computational Biology Research Initiative seed funding. Towards the understanding of gut-brain crosstalk in Huntington’s disease. Role: CIA. $20K.
2016 Translational Research Institute SPORE grant, Obesity-induced Barrett’s oesophagus and associated cancer: mechanisms and diagnostic tools. A/Prof M. Hill, Dr A. Barbour, Dr K-A. Lê Cao (CIC). $100K
2016 Translational Research Institute SPORE grant, Towards biomarkers for patient stratification in sepsis, Dr A. Blumenthal, Prof B. Venkatesh, A/Prof J Cohen, Dr K-A. Lê Cao, Dr D. Vagenas, Prof I. Frazer (CID). $80K
2014 – 2015 The Juvenile Diabetes Research Foundation (JDRF), 2-SRA-2015-306-Q-R, A genetic link between gut microbial flora and T1D susceptibility. Dr D. Zipris (University of Colorado) and co-CI from UQDI: Dr E. Hamilton-Williams, Dr J. Mullaney, A/Prof M. Hill, Dr K-A. Lê Cao (PI). $500K
2014 The Juvenile Diabetes Research Foundation (JDRF), 1-PNF-2014-153-A-V, Risk of diabetes progression in at-risk subjects with metabolic and inflammatory signatures. Prof R. Thomas (UQDI), K-A. Lê Cao et al. (PI). $110K
2014 UQ Major Equipment and Infrastructure, 2014000102, High throughput gene expression of patient samples via the Nanostring nCounter system. Prof M. Gandhi and 9 co-CI from UQDI, K-A. Lê Cao (CIJ). $169K
2014 – 2016 NHMRC Project Grants Funding, APP1058993, Blood biomarkers in Hodgkin Lymphoma. Prof M. Gandhi, Prof M. Fulham, A/Prof J. Trotman, Dr K-A. Lê Cao, Dr L. Berkahn. (CID). $513K
2013 – 2015 ARC Discovery Project, DP130100777. The Stemformatics gene expression compendium: development of multivariate statistical approaches for cross platform analyses. A/Prof C. Wells, Dr K-A. Lê Cao (CIB). $269K, shared postdoctoral fellow.
Our lab aims to inspire younger generations of budding statisticians, data analysts and computational biologists to advance the field of computational biostatistics.
All our members use GitHub and thrive for reproducible research, see:
- https://github.com/ajabadi
- https://github.com/EvaYiwenWang
- https://github.com/abodein/timeOmics
- https://github.com/ivirshup
- https://github.com/mixOmicsTeam
- https://github.com/SarithaKodikara
- https://github.com/meiosis97/Sincast
Current
2020 – Handbook about multivariate projection-based methods and how to apply them using mixOmics to integrate biological data.
2020 – A 6-week online course ‘mixOmics R Essentials for Biological Data Integration’ that will be run once or twice a year (first iteration was in Nov 2020).
2019 – We have developed a 16-week online course opened for University of Melbourne students called ‘Data fundamentals’ with Dr Sue Finch (Statistical Consulting Centre, School of Mathematics and Statistics). The course is opened every trimester. Have a look at this page if you wish to register, it is a fun course to learn how to work with data.
Since 2014 – We teach specialised workshops to introduce key concepts in multivariate statistics, with applications using the R software mixOmics. Our mixOmics web page provides numerous tutorials to apply the different multivariate integrative methods implemented in mixOmics.
Past
We taught introductory statistics ‘Statistics for frightened bioresearchers’ lecture materials can be found here.
Below is a list of opportunities in our lab, including undergraduate and postgraduate research projects and scientific visits.
Positions
We are looking for self-motivated candidates in the field of computational statistics applied to high-throughput biological data, as well as data analysts and software developers. Contact us! (and follow us on linkedIn for new opportunities).
Students
We welcome undergraduate, hons/Msc and PhD students willing to be part of the group to apply our methods to specific biological problems, or develop innovative computational methods at the forefront of ‘omics and microbiome data integration. There are plenty of projects to choose from our research themes and cross-discipline projects, check our research page for major themes, and latest post updates on our research outputs.
Visiting scientists
We welcome wet-lab researchers and assist them in acquiring the necessary skillsets to analyse their own data with our tools, and dry-lab researchers to collaborate on our many exciting projects.
- Dr Olivier Chapleur and Ms Laetitia Cardona stayed for 10 and 3 weeks with us in 2017. Here is a brief description of the work they undertook with us, and their feedback.
- Dr Sébastien Déjean stayed for 5 weeks with us in July 2018 and helped run a mixOmics workshop.
- Prof Malu Calle Rosingana visited us for 4 weeks in January 2019.
- Stijn Hawinkel, PhD candidate in Prof Olivier Thas (Ghent University) visited us for 3 months (March – May 2019).
- Dr Olivier Chapleur and Ms Laetitia Cardona were back for 4 and 6 weeks from April 2019. They gave us a hand for our upcoming mixOmics workshop focusing on microbiome data analysis.
- Attila Csala, PhD candidate in Prof Aeilko Zwinderman (University of Amsterdam) visited us for 4 months (Nov 2019 – March 2020)
- Pedro Salguero García, PhD candidate in Prof Ana Conesa and Dr. Sonia Tarazona from the Polytechnical University of Valencia, Spain came for 3 months in 2022.
- Quentin Le-Graverand, PhD candidate from INRAE Toulouse came for 3 months in 2022.
- Prof Ivy Chung, University of Malaya, 3 months 2023.
- Yi-Wen Hsiao, PhD candidate, visitor from University of Taiwan (1 year stay)
- Coline Fournier, École Normale Supérieure France (6 weeks, 2024)
- Dr Kris Sankaran, University of Wisonsin (6 weeks, 2024)
- Carla Perpiña Clerigues, PhD candidate, University of Valencia (5 months, 2024)
- Sebastian Hesse, PhD candidate, Munich University (12 months, 2024)
- Wasana Yuwattana, Chulalongkorn University, Bangkok (6 months, 2024 – 2025)
- Marko Terzin, PhD candidate, James Cook University (3 months 2023; 6 months in 2025)
@: kimanh.lecao[ at ]unimelb.edu.au
Ph: +61 3 8344 3971
We are located at:
Melbourne Integrative Genomics | Old microbiology building 184 ground floor | The University of Melbourne
Main entrance is through Royal Parade, approximately at 30 Royal Parade, next to the Kenneth Meyer building.
Google map pin of front entrance: https://goo.gl/maps/te888rSFeyc6LqgV6
There is a bell in the reception area, please ring.
