Posts tagged with microbiome

  1. Metaphor: A workflow for streamlined assembly and binning of metagenomes

    Genome-resolved metagenomics techniques aim to recover genomes from high-throughput sequencing data, and have led to unprecedented insight into microbial diversity, ecology, and evolution. However, data pipelines …

    lecao-lab.science.unimelb.edu.au/2023/08/02/metaphor

  2. Article: PLSDA-batch: a multivariate framework to correct for batch effects in microbiome data

    It’s been a long journey! The method developed by my former PhD student Eva Yiwen Wang is out and ready to be used! Yiwen Wang, Kim-Anh …

    lecao-lab.science.unimelb.edu.au/2023/01/20/article-plsda-batch

  3. Review article: Statistical challenges in longitudinal microbiome data analysis

    With Saritha Kodikara and Susan Ellul, we have published our latest review and benchmarked existing methods for longitudinal microbiome analysis on simulated data and a case …

    lecao-lab.science.unimelb.edu.au/2022/07/27/longitudinal-microbiome-data-analysis

  4. Integrating independent microbial studies to build predictive models of anaerobic digestion inhibition by ammonia and phenol

      Our collaboration with A/Prof Olivier Chapleur lab (INRAE, France) continues in anaerobic digestion! In this study we applied our MINT framework* to integrate independent 16S …

    lecao-lab.science.unimelb.edu.au/2020/08/07/anaerobic-digestion-inhibition-by-ammonia-and-phenol

  5. Model-based joint visualization of multiple compositional omics datasets

    Stijn Hawinkel did a 4 month PhD placement in our lab in 2019 and developed a neat approach to integrate compositional multi-omics data sets. Stijn introduces.a …

    lecao-lab.science.unimelb.edu.au/2020/07/21/visualization-of-multiple-compositional-omics-datasets

  6. EMRI PhD scholarship available

    In collaboration with A/Prof Heroen Verbruggen, associate professor in the School of BioSciences we are opening a PhD position in computational metagenomics. More details below. The supervisory …

    lecao-lab.science.unimelb.edu.au/2020/06/30/emri-phd-scholarship

  7. 3MT®: Win the war inside our gut by Yiwen Eva Wang

    Our own Eva has applied for the 3-minute thesis competition! It provide an opportunity to not only promote the research of a postgraduate student, but also practice …

    lecao-lab.science.unimelb.edu.au/2020/06/24/3-min-thesis-competition-yiwen-wang

  8. Article published: Variable selection in microbiome compositional data analysis

    Antoni Susin, Yiwen Wang, Kim-Anh Lê Cao, M Luz Calle (2020) Variable selection in microbiome compositional data analysisNAR Genomics and Bioinformatics, Volume 2, Issue 2, June 2020, lqaa029, …

    lecao-lab.science.unimelb.edu.au/2020/06/03/variable-selection-in-microbiome-compositional-data-analysis

  9. Article in the Pursuit: Getting to know your microbiome better

    Research into our gut microbiome – or our ‘second brain’ – has already produced vast amounts of data, but we are only scratching the surface of …

    lecao-lab.science.unimelb.edu.au/2020/01/15/article-in-the-pursuit-getting-to-know-your-microbiome-better

  10. Managing batch effects in microbiome studies

    Yiwen (Eva) Wang’s first publication from her Ph.D studies was published in Briefings in Bioinformatics. In her article review, Eva describes the topical issues of batch …

    lecao-lab.science.unimelb.edu.au/2019/12/12/managing-batch-effects-in-microbiome-studies

Number of posts found: 11